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LLM and GNN: How to Improve Reasoning of Both AI Systems on Graph Data

Artificial intelligence software was used to enhance the grammar, flow, and readability of this article's text.

Artificial intelligence software was used to enhance the grammar, flow, and readability of this article’s text.

Graph neural networks (GNNs) and large language models (LLMs) have emerged as two major branches of artificial intelligence, achieving immense success in learning from graph-structured and natural language data respectively.

As graph-structured and natural language data become increasingly interconnected in real-world applications, there is a growing need for artificial intelligence systems that can perform multi-modal reasoning.

This article explores integrated graph-language architectures that combine the complementary strengths of graph neural networks (GNNs) and large language models (LLMs) for enhanced analysis.

Real-world scenarios often involve interconnected data with both structural and textual modalities. This brings forth the need for integrated architectures that can perform multi-faceted reasoning by unifying the complementary strengths of GNNs and LLMs.

Specifically, while GNNs leverage message passing over graphs to aggregate local patterns, node embeddings are limited in their ability to capture rich features.

In contrast, LLMs exhibit exceptional semantic reasoning capabilities but struggle with relational reasoning over structured topology inherently understood by GNNs.

Fusing the two paradigms allows more contextual, informed analysis.

Recently, integrated graph-language architectures that synergize the complementary strengths of GNN encoders and LLM decoders have gained prominence.

As summarized in a survey paper (Li et al. 2023), these integrated approaches can be categorized based on the role played by LLMs:

A Survey of Graph Meets Large Language Model: Progress and Future Directions

Li et al. 2023
Li et al. 2023

LLM as Enhancer: LLMs strengthen node embeddings and textual features to boost GNN performance on text-attributed graphs. Techniques apply either explanation-based enhancement that leverages additional LLM-generated information or directly output embedding-based enhancements.

LLM as Predictor: Leverages the generative capabilities of LLMs to make predictions on graphs. Strategies either flatten graphs into sequential text descriptions or employ GNNs for structure encoding before LLM predictions.

GNN-LLM Alignment: Focuses on aligning the vector spaces of GNN and LLM encoders for coordinated analyzed. Alignment can be symmetric with equal emphasis or asymmetric prioritizing certain modalities.

The core motivation is effectively fusing the relational modeling strengths of graphs with the contextual reasoning capacity of language models. This shows great promise in lifting analysis abilities on interconnected Data combining both structure and semantics.

Li et al. 2023
Li et al. 2023

Reasoning Challenges :

For LLMs

While large language models (LLMs) have achieved impressive performance on a wide variety of natural language tasks, their reasoning ability is constrained when it comes to graph-structured data.

This is because most graphs lack an intrinsic sequential structure that LLMs can process. For instance, social networks, molecular data, or knowledge graphs define complex relationships between entities that cannot be easily flattened into a text description.

As such, LLMs struggle to effectively incorporate positional and relational dependencies based on the graph topology into their reasoning process. Without straightforward conversion of nodes and edges into words/tokens, LLMs cannot perceive insights like neighborhood similarities, community structures, or multi-hop connections that facilitate graph analysis.

For GNNs

On the other hand, graph neural networks (GNNs) are designed to aggregate local neighborhood information around each node by message passing between connected nodes. This allows them to uncover patterns and roles of nodes based on graph positions.

However, reasoning is largely confined to individual nodes and their immediate neighbors. Capturing longer range dependencies across far-off nodes remains difficult for standard GNN architectures.

More importantly, GNNs rely on fixed-sized vector representations of nodes that constrain their ability to express complex semantics. Without the ability to process rich textual features, the reasoning capacity gets bottlenecked on the graph side as well.

I. Enhancer, Predictor or Alignment

1. LLM as Enhancer

This category of techniques focuses on using the knowledge and contextual understanding of large language models (LLMs) to enhance the learning process of graph neural networks (GNNs), specifically on text-attributed graphs.

The core motivation is that while GNNs are specialized for topological analysis, they rely on limited textual node embeddings. Augmenting features through external semantic knowledge from language models provides a pathway for boosted performance.

Explanation-Based Enhancement

A class of approaches prompt LLMs to generate additional node explanations, descriptors or labels to enrich textual attributes. These supplement the existing text data to allow improved embedding. For example, an LLM may output research area tags for papers in a citation dataset.

Embedding-Based Enhancement

Alternatively, LLMs can directly output enhanced text embeddings fed into GNNs instead of generic word vectors. Fine-tuning strategies like graph-based training or adapter layers allow injecting topology-awareness. By processing text through task-tuned LLMs first, the linguistic expressivity for the graph model can be massively elevated.

2. LLM as Predictor

This branch focuses on empowering the predictive capability of LLMs by encoding graph-structured data such that language models can effectively leverage their self-attention to uncover insights.

Graph Flattening

A common technique is flattening graphs into sequential node descriptions similar to sentences via natural language templates. For example, a paper citation network can transform into mentions of research papers with directed "cites" connections. The sequential linearization allows direct application of LLM architectures.

GNN Fusion

For tighter integration, GNN encoders can be used to extract topological representations first, which are then fused with token embeddings within the LLM to leverage both modalities. The LLM then makes predictions over the consolidated embedding.

3. GNN-LLM Alignment

This category focuses specifically on techniques to align the vector spaces of GNN and LLM encoders for improved consolidated reasoning, while retaining their specialized roles.

Symmetric Alignment

Methods like contrastive representation learning given aligned graph-text pairs treat each encoder equally during training.

Asymmetric Alignment

Approaches for injecting structural knowledge directly into LLM encoders via auxiliary tuned graph layers or distillation asymmetricaly target enhancing language reasoning.

II. Integrating Graph Structure with Text Semantics

To overcome the individual reasoning limitations of both graphs and language models, an effective approach is to integrate GNN and LLM modules together into an end-to-end trainable architecture.

The key insight is to allow both components to complement each other instead of work in isolation – fusing the topological modeling strengths of graphs with the contextual reasoning capacity of language models.

This enables enhanced collective reasoning by jointly learning over the two modalities rather than using them in a decoupled manner. Specifically, the graph encoder leverages message passing to produce representations of structural properties like node neighborhoods, communities, roles and positions.

Meanwhile, the text decoder utilizes self-attention over sequential tokens along with pre-trained knowledge to generate inferences grounded in rich semantic features.

GNN-LLM Fusion Architecture

A typical high-level blueprint contains three key components:

  1. Graph Encoder: A GNN like Graph Convolutional Networks (GCNs) or Graph Attention Networks (GATs) that outputs node embeddings capturing topology.
  2. Inter-Modal Projector: A cross-modal alignment module like contrastive learning that maps graph and text vectors into a common embedding space.
  3. Language Decoder: An LLM like BERT that performs token-level reasoning on the fused graph-text representations from the projector.

By encoding structure and semantics separately in their native formats, and fusing via alignment, the strengths of both graphs and language can be unified within an integrated reasoning system. The joint end-to-end learning allows appropriate mixing of signals.

III. Strategies for Improved Reasoning

Prompt-based Reformulation

Carefully designing prompts that describe key graph concepts like nodes, edges, connectivity, positions etc. in a natural language format allows shifting the structural graph domain to one that plays to the strengths of large language models (LLMs).

By mapping graph components into words/tokens, complex topology and relationships can be translated into sequences that LLM architectures are inherently designed to process and reason over. This facilitates transferring of reasoning patterns between the two modalities.

For instance, a paper citation graph could be portrayed through mentions of papers along with "cites" or "cited by" relationships.

Multi-hop Neighbor Description

LLMs are limited in their ability to aggregate global graph structure and capture long-range dependencies due to sequence length constraints. Describing multi-hop neighbors for each node provides additional contextual information about extended network positions and roles.

By flexibly increasing the hop limit and recursively integrating further nodes, LLMs can learn to mimic the aggregation process of graph neural networks, enabling locality as well as globality aware representations.

In-Context Learning

Demonstrating graph analysis through step-by-step reasoning over examples allows steering LLM graph understanding in an interpretable direction. By feeding premises and conclusions of tasks alongside explanations, LLM generations can mimic and chain such logical processes.

This technique of learning from contextual demonstrations allows gaining more coherent and sound graph reasoning abilities. Fine-tuning over such data leads to stronger inductive bias.

Interpretable Fine-tuning

Strategies like adapter layers and prompt-based tuning allow precisely injecting structural knowledge into language models while maintaining overall model interpretability due to isolated adaptation. By anchoring customizations to certain layers only, reasoning capacity can be lifted without losing linguistic coherence.

IV. Future Outlook

Hierarchical Reasoning with LLM Controllers

Looking beyond simply fusing GNNs and LLMs, formulating language models as meta-controllers that can selectively delegate to and coordinate between the most optimal graph, text, and other specialized modules promises more sophisticated reasoning.

Based on hierarchical task decomposition, LLMs can plan computational paths through available AI components, combining strengths in a dynamic flow. This also builds towards more human-like problem solving architectures.

For instance, a recommendation system could use LLMs to break down objectives, leverage GNN user encoders, apply vision tools for item analysis and finally fuse signals for outcomes.

Transferable Graph-Centric Pre-training

A persistent challenge for graph neural networks is poor generalization across domains owing to varying structure and schemas. Pre-training GNN models on large corpora of representative graphs before downstream fine-tuning mitigates this issue.

Similarly pre-training strategies customized for graph topological patterns and injections into language models also needs exploration for improving reasoning transferability across graph tasks.

Evaluating LLM Graph Expressivity

Given the dominance of LLMs for language domains, analyzing their theoretical expressive power w.r.t fundamental graph functions also offers a research direction.

For instance, the 1-WL test is used to evaluate GNN expressivity. Do LLMs enhanced with certain structural injections match or exceed such baselines? Element-level and network-level evaluations can quantify this.

Towards Shared Representations

Looking beyond model-specific optimizations, creating shared vector spaces allowing seamless consolidation of signals from graphical and textual modalities provides the most flexible reasoning foundation.

Balancing specificity and commonality when aligning encoders, and synergizing signals during joint analysis offers an intriguing path forward.

Conclusion

The Need for Multi-Paradigm Reasoning

To recap, real-world data is increasingly becoming interconnected, with both graph-structured representations of relationships between entities as well as text-based information associated with nodes. This drives the need for artificial intelligence techniques that can perform multi-faceted reasoning spanning both topological as well as semantic domains.

Neither pure graph-centric or text-centric approaches can fully address the complexities of such interconnected data alone. This necessitates integrated architectures unifying multiple specialized modalities.

Complementary Strengths of GNNs and LLMs

Among the two most dominant analysis paradigms currently are graph neural networks, which excel at computational patterns over graph topologies, and large language models that exhibit extreme reasoning capacity over textual concepts.

Fusing both offers an opportunity to combine topological proficiency with semantic expression effectively within a joint model, providing more coherent multi-paradigm reasoning.

Ongoing Exploration of Techniques

As covered in this article, diverse techniques leveraging large language models as enhancers, predictors as well as for alignment with graph neural networks provide promising initial routes towards this harmonization goal. Each approach contributes unique strategies with their respective strengths and limitations.

Hierarchical techniques, optimized pre-training strategies and consolidated reasoning over shared representations offer intriguing forward-looking pathways as graph-text synergies continue being explored to address interconnected intelligence needs.

Image by the author
Image by the author

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